Publications


preprints

Krumin, Harris, and Carandini, "Decision and navigation in mouse parietal cortex", bioRxiv

Pachitariu, Stringer, Schröder, Dipoppa, Rossi, Carandini, and Harris, "Suite2p: beyond 10,000 neurons with standard two-photon microscopy", bioRxiv

Pachitariu, Steinmetz, Kadir, Carandini, and Harris, "Kilosort: realtime spike-sorting for extracellular electrophysiology with hundreds of channels", bioRxiv   

Dipoppa, Ranson, Krumin, Pachitariu, Carandini, and Harris, "Vision and locomotion shape the interactions between neuron types in mouse visual cortex"bioRxiv

2017



Steinmetz, ..., Zeng, Hausser, Carandini, and Harris, "Aberrant Cortical Activity In Multiple GCaMP6-Expressing Transgenic Mouse Lines", eNeuro

Burgess, Lak, Steinmetz, Zatka-Haas, Bai Reddy, Jacobs, Linden, Paton, Ranson, Schröder, Soares, Wells, Wool, Harris, and Carandini, "High-yield methods for accurate two-alternative visual psychophysics in head-fixed mice"Cell Reports

Rossi, Wykes, Kullmann, and Carandini, "Focal cortical seizures start as standing waves and propagate respecting homotopic connectivity"Nature Communications

Saleem, Lien, Krumin, Haider, Roman Roson, Ayaz, Reinhold, Busse, Carandini, and Harris, "Subcortical origin and modulation of the narrowband gamma oscillation in mouse visual cortex", Neuron

2016

Abrahamyan, Silva, Dakin, Carandini, and Gardner, "Adaptable history biases in human perceptual decisions", PNAS.

Haider, Schulz, Häusser, and Carandini, "Millisecond coupling of local field potentials to synaptic currents in the awake visual cortex", Neuron.

Pisauro, Benucci, and Carandini, "Local and global contributions to hemodynamic activity in mouse cortex", J Neurophysiol.

Rossant, Kadir, Goodman, …,Carandini, and Harris, "Spike sorting for large, dense electrode arrays", Nature Neuroscience.

Sato, Haider, Häusser, and Carandini, "An excitatory basis for divisive normalization in visual cortex", Nature Neuroscience.


Okun, Lak, Carandini, and Harris, "Long term recordings with immobile silicon probes in the mouse cortex", PLoS ONE.


Ganmor, Krumin, Rossi, Carandini, and Simoncelli, "Direct estimation of firing rates from calcium imaging data", arXiv.

2015

Lin, Okun, Carandini, and Harris, "The nature of shared cortical variability", Neuron.

Schulz, Sahani, and Carandini, "Five key factors determining pairwise correlations in visual cortex", J Neurophysiol.

Okun, Steinmetz, …, Mrsic-Flogel, Carandini, and Harris, "Diverse coupling of neurons to populations in sensory cortex", Nature.

Madisen, Garner, Shimaoka,…, Reid, Carandini, and Zeng, "Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance". Neuron.

Carandini, Shimaoka, Rossi, Sato, Benucci, and Knöpfel, "Imaging the awake visual cortex with a genetically-encoded voltage indicator"J Neurosci. 

Schölvinck, Saleem, Benucci, Harris, and Carandini, "Cortical state determines global variability and correlations in visual cortex", J Neurosci

2014

Schröder and Carandini, "A cortical rein on the tectum's gain", Neuron. 

Sato, Häusser, and Carandini, "Distal connectivity mediates summation and division across mouse visual cortex"Nature Neuroscience

2013

Pisauro, Dhruv, Carandini, and Benucci, "Fast hemodynamic signals in the visual cortex of the awake mouse"J Neurosci

Saleem, Ayaz, Jeffery, Harris, and Carandini, "Integration of visual motion and locomotion in mouse primary visual cortex", Nature Neuroscience.      

Carandini and Churchland, "Probing perceptual decisions in rodents", Nature Neuroscience.

Ayaz, Saleem, Schölvinck, and Carandini, "Locomotion controls spatial integration in mouse visual cortex", Current Biology

Benucci, Saleem, and Carandini, "Adaptation maintains population homeostasis in primary visual cortex", Nature Neuroscience.

Haider, Häusser, and Carandini, "Inhibition dominates sensory responses in the awake cortex", Nature

2012

Okun, Yger, Marguet, Gerard-Mercier, Benucci, Katzner, Busse, Carandini, and Harris, "Population rate dynamics and multineuron firing patterns in sensory cortex", J Neurosci

Sato, Nauhaus and Carandini, "Traveling waves in visual cortex", Neuron

Pearson, Barber, ...,
  • Benucci, ...
  • ,
  • Carandini, Yau, Sowden, and
  •  Ali, "Restoration of vision after transplantation of photoreceptors", Nature
  • Carandini, "From circuits to behavior: a bridge too far?", Nature Neuroscience

    Nauhaus, Busse, Ringach, and Carandini, "Robustness of traveling waves in ongoing activity of visual cortex", J Neurosci

    Carandini, "Area V1", Scholarpedia.

    Carandini and Heeger, "Normalization as a canonical neural computation", Nature Reviews Neuroscience

    2011

    Busse, Ayaz, Dhruv, Katzner, Saleem, Schölvinck, Zaharia, and Carandini, "The detection of visual contrast in the behaving mouse[video]J Neurosci.  

    Katzner, Busse, and Carandini, “GABAa inhibition controls response gain in visual cortex”, J Neurosci.

    2010

    Schulz and Carandini, “An uncorrelated state for the cortex?”, F1000 Biology Reports. 

    2009

    Benucci, Ringach, and Carandini, "Coding of stimulus sequences by population responses in visual cortex", Nature Neuroscience

    Katzner, Nauhaus, Benucci, Bonin, Ringach, and Carandini, "Local origin of field potentials in visual cortex", Neuron

    Nauhaus, Busse, Carandini, and Ringach, "Stimulus contrast modulates functional connectivity in visual cortex", Nature Neuroscience. 

    2008

    Nauhaus, Benucci, Carandini, and Ringach, "Neuronal selectivity and local map structure in visual cortex", Neuron.

    2007

    Carandini, Horton, and Sincich, "Thalamic filtering of retinal spike trains by postsynaptic summation", J of Vision

    Frazor, Benucci, and Carandini, "Independent Encoding of Position and Orientation by Population Responses in Primary Visual Cortex", in Advances in Brain, Vision, and Artificial Intelligence, pp. 30-41, Springer. 

    Durand, Freeman, and Carandini, “Temporal properties of surround suppression in cat primary visual cortex”, Visual Neuroscience.

    Majaj, Carandini, and Movshon, “Motion integration by neurons in macaque MT is local, not global”, J Neurosci

    2006

    Bonin, Mante, and Carandini, “The statistical computation underlying contrast gain control”, J Neurosci. 

    Carandini, “What simple cells and complex cells compute”, J Physiol

    Carandini, “Measuring the brain's assumptions”, Nature Neuroscience

    2005

    Carandini, "How do we look?", The Scientist.

    Bonin, Mante, and Carandini, “The suppressive field of neurons in lateral geniculate nucleus”, J Neurosci

    Mante, Frazor, Bonin, Geisler, and Carandini, “Independence of luminance and contrast in natural scenes and in the early visual system”, Nature Neuroscience.

    Carandini, Demb, Mante, Olshausen, Tolhurst, Dan, Gallant, and Rust “Do we know what the early visual system does?”, J Neurosci

    Petrov, Carandini, and McKee, “Two distinct mechanisms of suppression in human vision”. J Neurosci

    Gabernet, Jadhav, Feldman, Carandini, and Scanziani, “Somatosensory integration controlled by dynamic thalamocortical feed-forward inhibition”. Neuron

    Mante and Carandini, “Mapping of stimulus energy in primary visual cortex”, J Neurophysiol.

    2004

    Priebe, Mechler, Carandini, and Ferster, "The contribution of spike threshold to the dichotomy of cortical simple and complex cells", Nature Neuroscience

    Carandini and Sengpiel, “Contrast invariance of functional maps in cat primary visual cortex”, J of Vision

    Carandini, “Receptive fields and suppressive fields in the early visual system”. In The Cognitive Neurosciences, 3d ed., Gazzaniga, ed., MIT Press.

    Bonin, Mante, and Carandini, "Nonlinear processing in LGN neurons". In Advances in Neural Information Processing Systems 16, Thrun, Saul, and Schölkopf, eds., MIT Press.

    2003

    Mante and Carandini, “Visual cortex: seeing motion”, Current Biology

    2002

    Carandini, Heeger, and Senn, "A synaptic explanation of suppression in visual cortex[Code][Appendix], Neurosci

    Freeman, Durand, Kiper and Carandini, "Suppression without inhibition in visual cortex", Neuron.  

    Hürlimann, Kiper, and Carandini, "Testing the Bayesian model of motion perception", Vision Research

    Meier and Carandini, "Masking by fast gratings", J of Vision.

    Kiper and Carandini, "Neural basis of pattern vision", Encyclopedia of Cognitive Science, MacMillan.

    2000

    Anderson, Lampl, Reichova, Carandini, and Ferster, "Stimulus dependence of two-state fluctuations of membrane potential in cat visual cortex", Nature Neuroscience

    Carandini, "Visual cortex: fatigue and adaptation", Current Biology.

    1999

    Carandini, Heeger, and Movshon, "Linearity and gain control in V1 simple cells", in Cerebral Cortex. Vol. 13: Models of cortical circuitsUlinski, Jones and Peters (Eds.), Plenum. 

    1998

    Carandini, Movshon, and Ferster, "Pattern adaptation and cross-orientation interactions in theprimary visual cortex", Neuropharmacology

    1997

    Carandini and Ringach, "Predictions of a recurrent model of orientation selectivity[code], Vision Research

    Carandini, Barlow, Poirson, O'Keefe, and Movshon, "Adaptation to contingencies in macaque primary visual cortex", Phil Trans R Soc London, B.

    1996

    Carandini, Mechler, Leonard, and Movshon, "Spike train encoding by regular-spiking cells of the visual cortex", J Neurophysiol

    Carandini "Linearity, gain control, and spike encoding in the primary visual cortex", PhD Thesis, New York University. 

    1995

    Carandini and Heeger, "Summation and division in V1 simple cells", in The Neurobiology of ComputationBower (Ed.), Kluwer

    1994

    Carandini and Heeger, "Summation and division by neurons in visual cortex", Science

    Gegenfurtner, Kiper, Beusmans, Carandini, Zaidi, and Movshon, "Chromatic properties of neurons in macaque MT", Visual Neuroscience